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Low Carb Keto Nut Free Apple Cream Cheese Muffins

Written By Unknown on Tuesday, 16 September 2025 | 07:27


These Amazing Keto Low Carb Apple Cream Cheese Muffins are heavenly for breakfast! Gluten Free, Almond Flour Free, Grain Free, Low Carb and No Sugar Added! We use real apple and cream cheese filling in these keto muffins and they are still just 3 g net carbs! Enjoy on your low carb diet or keto diet! 

 These Amazing Keto Low Carb Apple Cream Cheese Muffins are heavenly for breakfast! Gluten Free, Almond Flour Free, Grain Free, Low Carb and No Sugar Added!

Keto Apple Muffins

Summer is ending and if you’re a mom school is beginning again for the family. Breakfast options are needed for busy work and school mornings. Making ahead breakfast is always a good idea to make smooth and less stressful week ahead.

These scrumptious muffins are a family favorite in my house when it’s apple season and even the non low carb and sugar free friends and family will devour this lovely breakfast treat!

Are Apples Keto?


No foods are technically keto. Ketosis is a metabolic state your body is in when you eat a very low carb diet. 

How many grams of total carbs you need to eat or not eat will make a difference in getting your body into ketosis to burn your own body fat for fat loss. That carb amount will be different for each person.    

1 small apple at 149 grams has about 77 calories and 20 grams of total carbohydrates. Some people following a keto diet will only allow themselves 20 grams of carb intake for the entire day so eating one small apple would not be helpful for them and may kick them out of ketosis. 

Using a small amount of a higher-carb fruit like apple in a recipe that makes many servings is something that can be enjoyed whether you are following a keto diet or low carb diet.

keto apple cream cheese muffins

Some of you are most likely ready for all things pumpkin pie spice once September begins, but I enjoy creating special healthy recipes using beautiful luscious apples during the Fall.

Now it’s not say to get simply sub out the apples here and make these with some mashed pumpkin, you certainly could, but if you have a tradition to go apple picking in the fall then these delicious muffins will be a great recipe to use them up.

But for all my pumpkin spice lovers, here are some morning time favorite to add to your menu this week if you prefer:

Pumpkin Pancakes

Pumpkin Donuts

Pumpkin Twists

Pumpkin English Muffins

Keto Pumpkin Cream Cheese Muffins

keto apple muffins

How to Make Easy Apple Muffin Recipe

To view exact measurements, print this recipe and view nutritional information please scroll to the bottom of this blog post to see the recipe card.

Regardless of your choice of pumpkin or apple, the next time you are ready to bake, make these low carb muffins are and easy breakfast that is sure to please everyone! 

So perfect with the best texture and one bite of that delicious cream cheese swirl in the center makes you feel like your almost eating keto dessert for breakfast! Almost….but that never stops me anyway!

Ingredients

Softened butter 

Sour cream

Vanilla extract

Coconut flour

Vanilla protein powder

Monk Fruit Allulose brown sugar sub (Please use my sweetener guide and conversion chart of you want to use a different low carb sweetener)

Apple Pie Spice

Baking powder

Salt

Xanthan gum

Large eggs

Heavy cream

Apple, finely chopped (If you want to lower the total carbs even more, swap apple with chopped zucchini but definitely add the apple pie extract listed as optional below)

Softened cream cheese 

Egg yolk

Vanilla extract

Vanilla stevia

Optional: Apple Pie liquid extract for more apple flavor

low carb apple muffins

Instructions

Preheat the oven to 375 degrees F.

Place the wet ingredients (butter, sour cream and vanilla extract) into a stand mixer and mix until smooth.

Whisk the next 7 dry ingredients together then add them to the mixer. Blend on low until incorporated.

Add in 1 egg at a time to the mixer until well absorbed.

Pour in the heavy cream until well absorbed.

Stir in the apple.

Set aside muffin batter while making filling. 

Clean your mixer then add the cream cheese, egg yolk, vanilla and stevia. Mix on high until smooth. Set aside.

Use cupcake liners or parchment paper liners or grease well a 12 capacity muffin pan. Fill each cup half way with batter. 

Evenly scoop cream cheese over muffin tops. Finish with remaining batter over the cream cheese on each muffin. 

If desired add a few pieces of chopped apples to the top of each muffin. Sprinkle some golden monk fruit over the top if desired.

Bake for 25 minutes or until a toothpick comes out clean. Best at room temperature or chilled. Keep refrigerated if making ahead for breakfast. 

Store in an airtight container in the fridge for up to a week or in a freezer-safe container for up to a month.

keto apple cream cheese muffins

Coconut Flour Muffins 

I’ve adapted my original recipe from this Apple Muffin recipe to make these low carb, gluten free, tree nut free keto apple pie muffin because my youngest has a tree nut allergy.

 My go-to keto  flour to use is coconut flour.

I realize some with tree nut allergies are also allergic to coconut but I want to set the record straight, coconut is NOT a nut, regardless if the FDA is saying it is. It’s actually considered a fruit with a pit, like a peach.

Obviously if you or someone you love has a coconut allergy, don’t use this recipe. But for my son, he is able to enjoy anything I make using coconut products and these muffins were a hit for all my family!

Little sweet chunks of apple, creamy sweet cream cheese, you might not be able to have just one!

Interested in more yummy Apple Recipes? Check out my Low Carb Apple Danish, Apple Dump Cake, and my Low Carb Caramel Cheesecake Stuffed Apples!

These make for a delicious breakfast with your morning coffee and with just 3 grams net carb count, I think a pretty great way to start the day!

Keto Muffin Recipes

All my gluten-free muffins are delicious!

Easy Keto Pumpkin Muffins

Keto Blueberry Muffins

Keto Chocolate Chip Muffins

Keto Raspberry Vanilla Muffins

Keto Cinnamon Roll Muffins

Low Carb Apple Cream Cheese Muffins

Low Carb Apple Muffins 

Print

Low Carb Apple Cream Cheese Muffins

Servings 12
Calories 254kcal

Ingredients

Muffin Batter

Cream Cheese Filling

Instructions

  • Preheat the oven to 375 degrees F.
  • Place the butter, sour cream and vanilla extract into a stand mixer or food processor and mix until smooth.
  • Whisk the dry ingredients together then add them to the mixer. Blend on low until incorporated.
  • Add in 1 egg at a time to the mixer until well absorbed.
  • Pour in the heavy cream until well absorbed.
  • Stir in the apple.
  • Set aside batter while making filling. 
  • Clean your mixer then add the cream cheese, egg yolk, vanilla and stevia. Mix on high until smooth. Set aside.
  • Use cupcake liners or grease well a 12 capacity muffin tin. Fill each cup half way with batter. 
  • Evenly scoop cream cheese over each muffin. Finish with remaining batter over the cream cheese on each muffin. 
  • Top with a few pieces of apple if desired. Sprinkle some Brown Sugar Sub over the top if desired.
  • Bake for 25 minutes or until a toothpick comes out clean. Best at room temperature or chilled. Keep refrigerated if making ahead for breakfast. 

Notes

Net Carbs: 3 g
This recipe makes 12 muffins.
This recipe was first published in August 2017.

Nutrition

Serving: 1muffin | Calories: 254kcal | Carbohydrates: 7g | Protein: 6g | Fat: 21g | Saturated Fat: 10g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 5g | Trans Fat: 0.3g | Cholesterol: 143mg | Sodium: 262mg | Potassium: 155mg | Fiber: 4g | Sugar: 2g | Vitamin A: 690IU | Vitamin C: 0.4mg | Calcium: 75mg | Iron: 1mg

The post Low Carb Keto Nut Free Apple Cream Cheese Muffins appeared first on Sugar-Free Mom.

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